Scaffold Ga0118729_1133403

Overview

Basic Information

• Taxon OID: 3300009130
• Scaffold ID: Ga0118729_1133403
• Source Dataset Name: Combined Assembly of Gp0139511, Gp0139512
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1147
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED64 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 103

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006383	Metagenome	374	Y
F021674	Metagenome	218	Y
F069451	Metagenome / Metatranscriptome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0118729_11334032	F006383	GGAGG	MLIKDKMWKVQQPGTILRARHSARRGQLALVLARPYSGPRPSNGYPPTKYVKMQMISTGERIEESLTNANNCWDIVSEP*
Ga0118729_11334033	F021674	GAGG	MERETYNSRLKSNPENIPVGSLLRVKKHCRKNITIRHNGEYGVLALSVNKGKYITHDVLFPNGTRCIYMPLNWEVVSYANQR*
Ga0118729_11334034	F069451	GAGG	VKPGDLVRIRKTAIDAYSTLWFIDLADRKAPLLLMEKINKQHWKVMKPDGTDCFISEHKLTTRMW*