Scaffold Ga0118729_1062564

Overview

Basic Information

• Taxon OID: 3300009130
• Scaffold ID: Ga0118729_1062564
• Source Dataset Name: Combined Assembly of Gp0139511, Gp0139512
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2004
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 103

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006867	Metagenome / Metatranscriptome	363	Y
F015346	Metagenome / Metatranscriptome	255	Y
F059941	Metagenome	133	Y
F098215	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0118729_10625643	F015346	GAGG	MNPEWKRYKVGDLVAVAANNVLGIITRSNYWALDEYLGGEIEFVDVLFGAHESKQYPVQYLVDMK*
Ga0118729_10625645	F059941	GGAGG	MKLGTLVRFAAYGAVMDTGYVSSHDEEDPEFMWVECAKMGPQRVRKDHKLLEVVSAAR*
Ga0118729_10625647	F006867	GAG	MPLQGKKLLKSIQKRCRIQPGDLVMSPMAAQSGTPKMALVVGLSPSCRFERDYEGAEDHIFYKCEPFDGTPAFVDYACNMEQVS*
Ga0118729_10625649	F098215	GAGG	MNRYNGAEFTYNIGDLVSFMQRRVTEDYVDDFLLTGIIIKQRLVFTADNKFLVRTPEKDYWVPRPSLTLLSKAENKT*