Scaffold Ga0118729_1054246

Overview

Basic Information

• Taxon OID: 3300009130
• Scaffold ID: Ga0118729_1054246
• Source Dataset Name: Combined Assembly of Gp0139511, Gp0139512
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2235
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 103

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005524	Metagenome	398	Y
F014465	Metagenome	263	Y
F029601	Metagenome	188	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0118729_10542462	F029601	N/A	MMKVGDMVRFNAPDDVFNGKKGIIVRYVEGNTYKQGFHYEVQTFCGFTIVALSFELEPLENEYEIPN*
Ga0118729_10542466	F005524	AGAAGG	MDIGDKVQHFGTGSVGTVIDSSYEVETPFQQLCVQWEDDLAPHKDSWERRDALSIIPHEPYVYSFPD*
Ga0118729_10542468	F014465	AGGAG	MKLRGMTMIGALVRDCSMIMKIVTGYKCSNRGEYIQFAGDHESAWYPLDSFEILSTED*