Scaffold Ga0118729_1012218

Overview

Basic Information

• Taxon OID: 3300009130
• Scaffold ID: Ga0118729_1012218
• Source Dataset Name: Combined Assembly of Gp0139511, Gp0139512
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6517
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (76.19%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 103

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023710	Metagenome / Metatranscriptome	209	Y
F024414	Metagenome / Metatranscriptome	206	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0118729_10122181	F024414	GAGG	MGTRLADIIFDKHDDLLYEDERAMKLTHYVMAERCLQVEIHGIYENYKEGDYDTLTYILEGGFKGFKNMEPSELIEEYKAIENKWYELEADNELHWEPY
Ga0118729_101221810	F023710	AGAAGG	MLYKNKLKGLLIRNKELKIMLKNVERKIQIFLEGIGGIKRLEFVHGTLYLKLEDDKDCDFIHKELRTFYKEFINPEGGVNMYFVGDEFAFDFVPVDAETPLWDEPEGSKIDTLLELENEMSQGK*