NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0118729_1012190

Scaffold Ga0118729_1012190


Overview

Basic Information
Taxon OID3300009130 Open in IMG/M
Scaffold IDGa0118729_1012190 Open in IMG/M
Source Dataset NameCombined Assembly of Gp0139511, Gp0139512
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Genomics Facility
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6526
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location
Location NameCariaco Basin, Venezuela
CoordinatesLat. (o)10.5Long. (o)-64.66Alt. (m)Depth (m)103
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F068146Metagenome / Metatranscriptome125N

Sequences

Protein IDFamilyRBSSequence
Ga0118729_10121902F068146N/AMKIDNSSYTVTPPDLYMTEHGISILISSTNEQLTTSIKELFEKFIATSIVFLVQSNKTNSETLPWMWNVSKSCDFMIVDVDTCAWEDIMAGLLKSKEGEHRVLFYSDKYKRRETVKLINATGTNLVVRSITDINNYVKLQMSPEYFDEV*
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