Scaffold Ga0118729_1007134

Overview

Basic Information

• Taxon OID: 3300009130
• Scaffold ID: Ga0118729_1007134
• Source Dataset Name: Combined Assembly of Gp0139511, Gp0139512
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9558
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (59.09%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 103

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012401	Metagenome / Metatranscriptome	281	Y
F014127	Metagenome	265	Y
F040056	Metagenome / Metatranscriptome	162	Y
F073529	Metagenome	120	Y
F105509	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0118729_100713411	F012401	N/A	MNEQPSEDEKMIDGIVSLEKAALERLTEDRLTSGSLGPEVEDMLSEAGIYWDTLNNEYFSIDNFQRETFKRLAKEYASHNDA*
Ga0118729_100713417	F105509	GGAG	MKIGDMVLNDFGETAILLSEPRLVDHPEYCGPHYVADVLLTEFGCKDIWITDDVEIINEDR*
Ga0118729_100713418	F040056	GGAG	MQTHADFRIGTLVRWNGDDTEGADIDELGIVIKMPGADWHGNYHIAWSTSNTVSHHSPDMVEESLYQRQMEIIG*
Ga0118729_100713421	F073529	GGAGG	VKVGDLVILRSGKYNFSATEKAKWVWTEVLGVITDDRGFVDGTAEYKVYTADNKHTWSHVEDLTIVE*
Ga0118729_10071349	F014127	N/A	MEEGTTMLERINNVKGRILIAGDESSWDFGFMESLEEQLKSRGTLSPRQEEVLQQVEGRWSDEALSSRANWEQDWDTDLEAKFWIALQYYRKTGYYGNIVWKYLTTEGVRCGGTPSEKEYNKLVLNKYAAGVIRNVQSESKFPVGGTAVFRTGSRTHKGKACVILKYGDTEHVTSHAKGAKPIQVLPVGAAAPIWTEERWLKKAKKRK*