Basic Information | |
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Taxon OID | 3300009130 Open in IMG/M |
Scaffold ID | Ga0118729_1003029 Open in IMG/M |
Source Dataset Name | Combined Assembly of Gp0139511, Gp0139512 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Georgia Genomics Facility |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 17431 |
Total Scaffold Genes | 36 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 26 (72.22%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela |
Source Dataset Sampling Location | ||||||||
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Location Name | Cariaco Basin, Venezuela | |||||||
Coordinates | Lat. (o) | 10.5 | Long. (o) | -64.66 | Alt. (m) | Depth (m) | 103 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F018292 | Metagenome | 236 | Y |
F039088 | Metagenome | 164 | Y |
F077393 | Metagenome | 117 | Y |
F101190 | Metagenome | 102 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0118729_10030291 | F039088 | N/A | MNGEQENLFDAFLLKTFNVGDLVSWKDLGQHQKKYGFIQEIYSEKRGINRKFIFAKVIKTDGSYEPFNLSYLT |
Ga0118729_100302910 | F018292 | AGGAG | MSNIKQDAWGQLLASKPTLDEVKAYFKGKGGGPEGESHIIDANADKKEGFVWVYSTKSDATKIIDRCGDAILDYSFLDGQGVQLKIARKAFRGIHCAFRNVK* |
Ga0118729_100302931 | F101190 | GAGG | MFEVGDLVKLNYSEHIGIVIESSDRSLTDESQVYVYRIKWAVGEPYTWERFYNLILVAGVNNANV* |
Ga0118729_100302932 | F077393 | GGTGG | MYNTWDYKEGDLIEVEKLGWPIETGVVVRFSDVGPRKYWEWHGSSGRRQFFFEVKSPLQEDFKVKVLARA* |
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