Scaffold Ga0118729_1001802

Overview

Basic Information

• Taxon OID: 3300009130
• Scaffold ID: Ga0118729_1001802
• Source Dataset Name: Combined Assembly of Gp0139511, Gp0139512
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24655
• Total Scaffold Genes: 49
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 37 (75.51%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 103

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022282	Metagenome	215	Y
F022523	Metagenome	214	Y
F026408	Metagenome / Metatranscriptome	198	Y
F063091	Metagenome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0118729_100180220	F022523	AGG	MKIGDLVEFSYGRVGGQIDGIGIFMEYGSAGKHKVLFMGKGYWVPEQHIKPISMKRKSDLNEERLN*
Ga0118729_100180225	F063091	AGGA	MFYKSLFLLVFANLFNQAYNLENIQCPKWVPGTDQILPVGVTLSPELELENRVRCYCEVVKAKEAECLRRHVPATICKARTRLWVENNLKLKEAFQLVNDVAPLPRRDRMMNVEP*
Ga0118729_100180226	F026408	N/A	MSAFIGISAMLLFSTVNLEMMIAGNNRRISQAKISAASGLNHFTALGLTYETLRGRAGGLQTVQILPKTRLSPHTSYDVKVHFYPRLSERQYVVESTGYYTKAERIISLYPIKALFEGDE
Ga0118729_10018024	F022282	GAG	MDTPFRYNLGDLVEFTAKRATEEYIAETKLTGIIIKQRYVFTADNKFLVRAPSTDYWIRADKLTLVSRAENKS*