Scaffold Ga0118729_1001298

Overview

Basic Information

• Taxon OID: 3300009130
• Scaffold ID: Ga0118729_1001298
• Source Dataset Name: Combined Assembly of Gp0139511, Gp0139512
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30554
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 34 (94.44%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 103

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006383	Metagenome	374	Y
F015346	Metagenome / Metatranscriptome	255	Y
F019233	Metagenome / Metatranscriptome	231	Y
F026042	Metagenome	199	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0118729_100129815	F019233	AGGAG	MATLNFIMPRDLKDGFCEREEKTHKVKHSWLPSGQTRAIVGDQIALECYCKHCNLREWTQTSRFEFEMLQDYWKELR*
Ga0118729_100129827	F015346	GAGG	MNPQWKRYKVGDLVAVAAKQVLGLITRSNYWTLDEYLGGEIECVDVMFGAHESKQYPVQYLVEMK*
Ga0118729_100129830	F006383	GGAGG	MLDSADKMWAVQQPGTILRARHSAKYGQLALVLARAYSGPKPSNGYPPRQYVKMQWLSTGERFEEMLVNAHNCFDIVSSCDTLNHSEN*
Ga0118729_100129836	F026042	AGG	MSFDILKLLEQEGYISDGEDNIVHAEKAFFAARVMKWIRHKAQSEPDFDLSSYLTMLMYYKTGMADLKFTENEDKLLYKMKPVEPDKEVQELVNSLIKATRK