Scaffold Ga0118729_1000143

Overview

Basic Information

• Taxon OID: 3300009130
• Scaffold ID: Ga0118729_1000143
• Source Dataset Name: Combined Assembly of Gp0139511, Gp0139512
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 102754
• Total Scaffold Genes: 197
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 60 (30.46%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 103

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007770	Metagenome	345	Y
F016956	Metagenome / Metatranscriptome	243	Y
F020156	Metagenome / Metatranscriptome	225	Y
F039679	Metagenome	163	Y
F060426	Metagenome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0118729_1000143107	F039679	N/A	MSVKDSHLTIREDLVEEGLSVPVWFLDYQEDTHVEDTPSLNIDCDYCTDGEELNAWGANIIVKISDPTQFDKYGNPWKDRLAFAISADFDWN*
Ga0118729_1000143112	F007770	N/A	MSGEGLSVSFRRTQATTKSNSELLEEFQKIIYSSRVMKHMKWYGKLHSVDILEHGDDNRPKFQQEYVAIKDTFQFEISVYESWYEDANLYESHEVEDSFVSLARKFADHNGLMYFAKGFPAEWIETETIDGENCWNHFNVKPDDKNIDKICKIWHHYGMCMVRAEQFGQTDEMKRFYWEQARDEIKKIMEHKNECCI*
Ga0118729_1000143114	F016956	AGGAG	MINTIETWKAPQEVALAIIDLALTHIKKVELNPEIETEGDNFDYWNSYDLGDGNYIDYNIHCGDEWCVVKQDGSGEYEYTDPSTWSWDVCAYAVDPPTKDNPYHQIDTDREQYLFSYNKKGNKEVEFEK*
Ga0118729_100014338	F060426	N/A	MIINYDIPNYISDYQASAPRSNLKGFDDLVFKSHAGFADGKAIQAMLDFGSRNQFTISAVQNIADGTGLYGDHSDNTYEVAMWYDGRDTMLPLSIGDDVLAWQTPTQITKLMHQAHLNDFAWVCLLTDARQQHNKELGLDNLDQY*
Ga0118729_100014348	F020156	GAG	MRKQLKTELERLVKEENFNIQYANDILELYDDEIQDTSESTAYDKAMQDIDNVKAGEWDL