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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300009130 Open in IMG/M |
| Scaffold ID | Ga0118729_1000105 Open in IMG/M |
| Source Dataset Name | Combined Assembly of Gp0139511, Gp0139512 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Georgia Genomics Facility |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 116466 |
| Total Scaffold Genes | 218 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 93 (42.66%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales | (Source: IMG-VR) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Cariaco Basin, Venezuela | |||||||
| Coordinates | Lat. (o) | 10.5 | Long. (o) | -64.66 | Alt. (m) | Depth (m) | 103 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F007770 | Metagenome | 345 | Y |
| F029925 | Metagenome / Metatranscriptome | 187 | Y |
| F042280 | Metagenome / Metatranscriptome | 158 | Y |
| F060426 | Metagenome | 133 | Y |
| F092065 | Metagenome / Metatranscriptome | 107 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0118729_1000105118 | F007770 | AGG | MSGEGLSVSFRRTAMTQKSNQELLREFQDLVYSNKKIMSHMKWYGRDHSVEIMEHGDEELAEWQREAVAIKDTFEFTISVYDSWHEDADIYESHKRDDSFVSLASEFARDNWLHYFPEGFPAEWIETKTIDGEKCWNHFNVKPDDKNIDKICQIWHSYGMDMITESSDKMKRSYWERAREGIKAIMEK* |
| Ga0118729_1000105125 | F092065 | AGGA | MQEIIDKIYERMDFCANAHGATQEDEHNYILELSCLNEVLDKIERFPWNHFEDEAN* |
| Ga0118729_1000105131 | F042280 | N/A | MKIKNKWDEEFEVSVGDWVGFKCDIEQIGRVKEIQRRGALIIENEDGFDGDYIGGDTEALVGFDEVWKES* |
| Ga0118729_1000105171 | F060426 | N/A | MNNTESQLASFENLEFNQHPRFAEGTAIQARLKFGSRDQFEISVVQNIGSGTGLYGHEDDNTYEVAMWFDGRNTMLPLSLYDDVLAGQSPSDITRLMHQAHLNDFAWVTLLHSLRDEHRKEMELDN* |
| Ga0118729_1000105183 | F029925 | AGG | MYILKSILNQAGAVWQVESIAMRKVEAERLLKRRLSTNDGSRRYGLFPAS* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |