Scaffold Ga0118728_1235530

Overview

Basic Information

• Taxon OID: 3300009129
• Scaffold ID: Ga0118728_1235530
• Source Dataset Name: Combined Assembly of Gp0139513, Gp0139514
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 707
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED64 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 198

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006383	Metagenome	374	Y
F081542	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0118728_12355301	F081542	AGGAG	MNIFAIEGDAETGKIDWVKSAQSQDNLRVVKMILESCQILSTVLNEQGL
Ga0118728_12355302	F006383	GGAGG	MLDSSDKMWAVQQPGTILRARHSAKYGQLALVLARAYDGPKPSNGYPPRQYVKMQWLSTGERFEEMLVNAHNCFDIVSSCGKVDTKETV*