Scaffold Ga0118728_1038675

Overview

Basic Information

• Taxon OID: 3300009129
• Scaffold ID: Ga0118728_1038675
• Source Dataset Name: Combined Assembly of Gp0139513, Gp0139514
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2637
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → unclassified Rhodobacteraceae → Rhodobacteraceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 198

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022523	Metagenome	214	Y
F026408	Metagenome / Metatranscriptome	198	Y
F063091	Metagenome	130	Y
F101067	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0118728_10386753	F022523	AGG	MKTGDLVEFAYGRVGGQIGGLGVLAEVGTCGKHKVLFMGKGYWVPEQLIKPISIVRKDPANEPLDN*
Ga0118728_10386756	F101067	GGA	MRTPTLDLHGFKHHEVQNVVARFIEDWLGKNLFIDIITGNSEQMLFEAVKVIQQYGLEYMTGLPAYPGRVRVVMYDEYH*
Ga0118728_10386758	F063091	AGGA	MFYKSLFMLIFANMFNLTYQLENIECPKWVPGTNQLIPQGVSLSPELELQNRVRCYCEVVKSKEVECLSRYVPANICKARTRLWVENNLKLKDGFQLVNGVGPTPKRDRMMNVVP*
Ga0118728_10386759	F026408	GGA	MTLLLVLVMGAFIGISAMLLFSTTNMETMIAGNTRRLNQAKISAASGLNHFNALGLNYNTLRERAGDLQTVQILPETRLSSHTSYEVKVYFSPLLSDGQYMVESTGYYTKGDRILSFHPIKALFQGEQ*