Scaffold Ga0118728_1017152

Overview

Basic Information

• Taxon OID: 3300009129
• Scaffold ID: Ga0118728_1017152
• Source Dataset Name: Combined Assembly of Gp0139513, Gp0139514
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4891
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (84.21%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 198

Associated Families

Family	Category	Number of Sequences	3D Structure?
F077930	Metagenome	117	Y
F091881	Metagenome	107	Y
F094534	Metagenome	106	N
F096210	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0118728_10171521	F091881	N/A	HDYIKTLSHKVIKGGNMQVGDLVRIRKAWKNIYEGYEDIVGLVVYADCGYGGERPVGFRRIRIMHGDIRGQVYSVFAEEVLEVVKN*
Ga0118728_101715213	F077930	GGAGG	MEYNNFKQALDEAIEFITKEYPSSTWEGDVHDFYALLIKANFTNQVFIDYLKHAIDNKVYLPTNVTCVVDKGRISKVIIGG*
Ga0118728_101715214	F096210	GGAGG	MAYSQNWKRTDKLTYEDLKELLTSVVVELTDNAFAIKKASDDGGSMVEVWIEGGLQGTPNPQIPKARGWRVVWVSCPYGYLDVFEIRR*
Ga0118728_101715218	F094534	GAGG	LEHRVKILGGIMQIIKWIDDYRSSFAVVVECKGKSYLVIDDSCHVIIYTSDREGVISKHPELCKIEGKMLGEVIRDNRTFINNLRIWTKIDQNKVAK*