Scaffold Ga0118728_1012243

Overview

Basic Information

• Taxon OID: 3300009129
• Scaffold ID: Ga0118728_1012243
• Source Dataset Name: Combined Assembly of Gp0139513, Gp0139514
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6344
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (89.47%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 198

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006867	Metagenome / Metatranscriptome	363	Y
F015346	Metagenome / Metatranscriptome	255	Y
F022282	Metagenome	215	Y
F059941	Metagenome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0118728_101224311	F059941	GAGG	MKLGTLVQFAAYGAVMDTGYVSKYDDEPGWIWVDCIKMGPQLVREDSKMMEVVSESR*
Ga0118728_101224313	F006867	AGGA	MKQPPANINNEIQKRCHIQPGMLIKSTAGTELGKLALVVGISPACNFTQDYEGAEDHIFYKCEPFDGTPAFVDYVCNMEKVS*
Ga0118728_101224314	F022282	GAG	MTSSFKYNLGDLVEFTAKRATEEYIAETKLTGIVIKQRYVFTADNKFLVRTPSTDYWIRSDKLTLVSRAENKT*
Ga0118728_10122439	F015346	AGGA	MKPEYVSYKIGELVTANATRALGVVTRSNYWALDEYLGGETQFIDVLFGAHESKQYPVEYLVKVS*