Scaffold Ga0118728

Basic Information
Taxon OID	3300009129 Open in IMG/M
Scaffold ID	Ga0118728_1007239 Open in IMG/M
Source Dataset Name	Combined Assembly of Gp0139513, Gp0139514
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Georgia Genomics Facility
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009129 Open in IMG/M

Scaffold ID

Ga0118728_1007239 Open in IMG/M

Source Dataset Name

Combined Assembly of Gp0139513, Gp0139514

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Georgia Genomics Facility

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9391
Total Scaffold Genes	19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (57.89%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (57.14%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

9391

Total Scaffold Genes

19 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (57.89%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (57.14%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location
Location Name	Cariaco Basin, Venezuela
Coordinates	Lat. (^o)	10.5	Long. (^o)	-64.66	Alt. (m)	Depth (m)	198
Location on Map

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Source Dataset Sampling Location

Location Name

Cariaco Basin, Venezuela

Coordinates

Lat. (^o)

10.5

Long. (^o)

-64.66

Alt. (m)

Depth (m)

198

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F013357	Metagenome	272	Y
F017121	Metagenome	242	Y
F019113	Metagenome	231	Y
F034892	Metagenome	173	Y
F062279	Metagenome	131	Y
F064629	Metagenome	128	Y
F100958	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0118728_100723912	F019113	N/A	MDKLEVGDLVRDNLNEGRGNYGLGVIVEIDVPGLLGEKWGRSDPPADHDIPGKRYAVYFNKFERTITFHGDYLEKV*
Ga0118728_100723913	F013357	GGAGG	VARARYIPGALVEARNSKYGKGFGIIVAGPWSDTKAASQYRDLANEQEWFRVHWFEKPGNVDSYYMRRDKGQIDMSKNQIKLVRKK*
Ga0118728_100723914	F064629	GAGG	VTRLYEQCAGLLEDPYPDRKALRNFTWTDEAISDWEDIWHTLWHLGYKWEWQNSDRYARRYGDTFNLFAVHNDAVRLDMAIPLPGVIKFYEIRESLLDNPNDDHRLDHAVGAVDRWLYKYYTQRGALFTEDINYV*
Ga0118728_100723915	F062279	GAGG	MYERMKAFLHHCISVVVALVALGACCAYVLINSVIMTRVINDLRLDTYVSADTGLGIVMLILLLGWGPVWLWKSLERDRRYVGRL*
Ga0118728_10072392	F017121	N/A	MAERLRSLDAVYDRLDKIETQLKRYERLADENESLWQFLDDQKEMEGVFVGSAEEFAEEISDIMLRSMKTQGDA*
Ga0118728_10072398	F100958	AGGAG	MVFHGDYEVEFEIYEQKEGDWRSHLLGYMPGADALDAKLRWVEANETPPEKFDKIVALFPLKEWK*
Ga0118728_10072399	F034892	N/A	MEIKVGDLVRIRGNDWLGKPLGIVTEIKHLVHDQTRTEYTAITAVVGGKEFTFPDEAFELVNPVESEKN*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0118728_1007239

Overview

Ecosystem & Geography

Associated Families

Sequences