Scaffold Ga0118728_1003950

Overview

Basic Information

• Taxon OID: 3300009129
• Scaffold ID: Ga0118728_1003950
• Source Dataset Name: Combined Assembly of Gp0139513, Gp0139514
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14672
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (47.06%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 198

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024807	Metagenome	204	N
F029468	Metagenome / Metatranscriptome	188	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0118728_10039504	F024807	GAGG	MTKRVMPFNLVYHDRDQQLTLALHDNPVTLTRDEVDTLIFHLDSFLFDMDKARKPQPSAEGADTHAEAHGEMLMAQFDDDPNPYHGDYSED*
Ga0118728_10039505	F029468	N/A	MSPLRRIKREIGHGTTSTNGVKFEEMKIRLKKQAEKDFDKTDVEEKQLALNAACKDFVSEFIDCEGDVFYSTYNKAANSIWQYEQSVKNAAMTKVGPEWDHKAGVVGKWRYPHLRKDDD*