Scaffold Ga0118728_1000161

Overview

Basic Information

• Taxon OID: 3300009129
• Scaffold ID: Ga0118728_1000161
• Source Dataset Name: Combined Assembly of Gp0139513, Gp0139514
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 97631
• Total Scaffold Genes: 132
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 98 (74.24%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 198

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005620	Metagenome	395	Y
F016620	Metagenome / Metatranscriptome	246	Y
F048646	Metagenome	148	Y
F063091	Metagenome	130	Y
F101067	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0118728_1000161102	F016620	N/A	VLKKLTKALLLNEDLRIDPAASVQALYDIITSVRVTNKRDTNRLSVAKEHLRSIKRHVRSLNERVSSLEEQLKLLNEEK*
Ga0118728_100016116	F048646	GGAGG	VLKVSEVYEKQIRTTRERPDGSEYLNFEKVYETRECLVNTEYVVSIQPHEFTSDIDLARVQGSFPEGTKFSTFVLDGNSFRTSEIIVVGSFEKFCRLLQENDS*
Ga0118728_100016125	F005620	GGTGG	MKGKIMTADEIAKHVETFKTFCKNNRLRLKEDGDGLPVARAIGKFSDDQFFCNFKSGTIGVYVTRDTQRQFTYLNKKLIKMGCVPTQLGDFEASYDLEWMNIPPVARLLKIKKGAAKVSDPRWLRTN*
Ga0118728_100016157	F101067	N/A	VKKISTKKIADFMKTPTLDLHGIKHHEVSNVVARFIEDWLGKDLFIDIITGNSDQMLFETVKVIQQYGLEYMTGLPAHQGRVRVVMYDEFH*
Ga0118728_100016160	F063091	AGGAG	MIYKSLFLLIFANIFNQAYQLEYITCPKYVPGTNQLLPEGVDLSPELELMNRVRCYCEVVKAKERECLARHVPANVCKSRTNAWVEDNLKLKEEASPYNNFAPLPKRDRMINVEP*