Scaffold Ga0118727_1284984

Overview

Basic Information

• Taxon OID: 3300009128
• Scaffold ID: Ga0118727_1284984
• Source Dataset Name: Combined Assembly of Gp0137084, Gp0137083
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 997
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 234

Associated Families

Family	Category	Number of Sequences	3D Structure?
F089552	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0118727_12849842	F089552	GGAGG	MSREITPLSEYRRIVKSFDVFGLSPELRSLIMEAIESKAWKWFEQCDGCTCVSELHWPTKYFPPCLRHDFDWIRGKGDWAASKRFYRLQRAYGVPMWRAALRAGAVTAVWYGWSRWKKKGTVRPYQ*