Scaffold Ga0118727_1272012

Overview

Basic Information

• Taxon OID: 3300009128
• Scaffold ID: Ga0118727_1272012
• Source Dataset Name: Combined Assembly of Gp0137084, Gp0137083
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1035
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 234

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037175	Metagenome / Metatranscriptome	168	Y
F085538	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0118727_12720121	F037175	N/A	GIKMGLVFHTNHINKRFVRRVIENTLINIKEYPYGFLQLWDIHVWGLDDTNPQFFEHIKTTSGQKINPNMPSGVTGLYRMDLYLHDSSNSLKERENSDRIMHELCHARLIGTTDFVSGVHDNIDNRFSTTFWYWNKYKYTRFILSIIDIREFL*
Ga0118727_12720122	F085538	N/A	LTSENSFRVGVGICYWDDPKGLMKILSNSVVYKYITKFFVIDGKYKGRKDSSEFNPGFTDGLSCYGKVKLVNMDNRLQIDKRNKYWELAEEYDLDYMIVLDSDEYIEINPIVFDSQLRTIQDRPEQCYPVMQHQKGIMTMSRPRLFKAPFNFRHIQSTKENTISHGSLYTKDGVEIINQMYAWFKDHPKRQINSDDQS