NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0118723_1279481

Scaffold Ga0118723_1279481


Overview

Basic Information
Taxon OID3300009126 Open in IMG/M
Scaffold IDGa0118723_1279481 Open in IMG/M
Source Dataset NameCombined Assembly of Gp0139357, Gp0139356
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Genomics Facility
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)834
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location
Location NameCariaco Basin, Venezuela
CoordinatesLat. (o)10.5Long. (o)-64.66Alt. (m)Depth (m)198
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F105867Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0118723_12794813F105867AGGAGGMTFSDRERFIYHAATLMTMQHLQVLSKSDLQKNLKAVQNNRCTSLTDKQVEQIFLDVEYEALAMMRNAQEKLEKSCAKRQGYKKREFAEDVQEDYK*

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