Scaffold Ga0118723_1129140

Overview

Basic Information

• Taxon OID: 3300009126
• Scaffold ID: Ga0118723_1129140
• Source Dataset Name: Combined Assembly of Gp0139357, Gp0139356
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1492
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 198

Associated Families

Family	Category	Number of Sequences	3D Structure?
F053965	Metagenome / Metatranscriptome	140	N
F077161	Metagenome / Metatranscriptome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0118723_11291402	F053965	GGAGG	MGKLADAIKEYKTAPINSPAERAAKETILQITESQWWKDNVGREFKMPKKYDNKKQQAIFTEPQFIFIGNFIFGRHEFCERCRLYKGLLTYTNGQMVYAKPYIT*
Ga0118723_11291403	F077161	GGA	MRNLTLPEIQARFDRHAKLHRFEVDELFKNIKHKPFTEIQYRYLEIGIRHQFIYDIETSDFDPEQNFIICYVGILRDIVTEEIEHVQDSITKQDIKKAVSQSTFDFDKRLLTTLSHNMKQAHHVVGHYSTKFDNPYFRSRCLLTKQTDLIPGYGYQFYGDTWRMMKTTMKAKRNTLKNFIRQTTGNDEKTFVDLKYWYITHFKDHKLWKKSMDYIIDHCVKDVKMTYEGLKRAELFNNIGRAKT*