Scaffold Ga0118687_10058534

Overview

Basic Information

• Taxon OID: 3300009124
• Scaffold ID: Ga0118687_10058534
• Source Dataset Name: Marine sediment microbial communities from methane seeps within Hudson Canyon, US Atlantic Margin - Hudson Canyon PC-16 72 cmbsf
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1293
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment → Marine Sediment Microbial Communities From Methane Seeps Within Hudson Canyon, Us Atlantic Margin

Source Dataset Sampling Location

• Location Name: Hudson Canyon, US Atlantic Margin
• Coordinates
  • Lat. (^o): 39.54345
  • Long. (^o): -72.3998
  • Depth (m): 541.1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010532	Metagenome	302	N
F020816	Metagenome / Metatranscriptome	222	N
F046985	Metagenome	150	N
F051564	Metagenome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0118687_100585341	F010532	AGGAG	MNRTLYKKLEDICAREYILNKLSATKFRTFVDFLYDDIRTWDKPMEVSEVDIIHRIEEHMSYMVSSYL
Ga0118687_100585342	F046985	AGGAGG	MSDLLELYNESWSEEFNVDVDASKSMKVHVAPKTYAMLVQIGVFNIHSRGIADWVSKVDVEAIYMNLDFSVDMLLQNYQAIKMAVMLKEYPFDRGYQQQADKIWNNILQHLSEFNPEDAEELRNKLFKRRVA*
Ga0118687_100585345	F051564	GGAGG	MIPKQMIREWCETYEEAIETLYYLTNRSVGTAKEEIREGLEDFFIDNGLMSEEEFKQEVDDEV*
Ga0118687_100585346	F020816	AGGAGG	MKVYEITVSTTVQIDSLDDYAESKEHAIDIMWDRWGVYKDTLEITEVKTWEEDDDT*