Scaffold Ga0118687_10030698

Overview

Basic Information

• Taxon OID: 3300009124
• Scaffold ID: Ga0118687_10030698
• Source Dataset Name: Marine sediment microbial communities from methane seeps within Hudson Canyon, US Atlantic Margin - Hudson Canyon PC-16 72 cmbsf
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1770
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment → Marine Sediment Microbial Communities From Methane Seeps Within Hudson Canyon, Us Atlantic Margin

Source Dataset Sampling Location

• Location Name: Hudson Canyon, US Atlantic Margin
• Coordinates
  • Lat. (^o): 39.54345
  • Long. (^o): -72.3998
  • Depth (m): 541.1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005843	Metagenome / Metatranscriptome	388	Y
F009460	Metagenome / Metatranscriptome	317	N
F020173	Metagenome	225	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0118687_100306982	F009460	AGGAG	MAKWDLSKLEDCASVGAHIDEDSSTPTQPTRLMLVMSIRRKADIMRMDAGRGPERLTIKQRAEEIMALCEMLEKRL*
Ga0118687_100306983	F005843	GAGG	MTLAEPVFMAFAVFSSVDECKAFAKYYDLARIFEPQCVEMGGEADYRRPFPDVRPKPRPTQENNNG*
Ga0118687_100306986	F020173	GGA	MICTTCDGTGFIELPRFVNTPDSDPWTTVRCPECQDEDDFDWRNEEEEE*