Scaffold Ga0118687_10021441

Overview

Basic Information

• Taxon OID: 3300009124
• Scaffold ID: Ga0118687_10021441
• Source Dataset Name: Marine sediment microbial communities from methane seeps within Hudson Canyon, US Atlantic Margin - Hudson Canyon PC-16 72 cmbsf
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2115
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment → Marine Sediment Microbial Communities From Methane Seeps Within Hudson Canyon, Us Atlantic Margin

Source Dataset Sampling Location

• Location Name: Hudson Canyon, US Atlantic Margin
• Coordinates
  • Lat. (^o): 39.54345
  • Long. (^o): -72.3998
  • Depth (m): 541.1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020110	Metagenome	226	N
F022313	Metagenome	215	Y
F098218	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0118687_100214411	F020110	N/A	MSTQLEVQARLSYTRAMLERGIRTASVATMVSAKFCVSRSTAYNDITAAQAEIELSDDGPSLEEASEPINTDSVLAMLQHRLEVSVATGDDKAVCSLIKAMNQAKQWNGYNTQSASPFA*
Ga0118687_100214413	F022313	N/A	MYHYQPQQEYESAKLERILKDLQAIIEREKKRHMMDEHLTHSMRNLLEDEIIPMLEAELNYDPTPTTSYDFFH*
Ga0118687_100214415	F098218	GAG	MVMSGDINWNNRPHEVIAAAKSRALAALHHKHSKGLTTLERAYLHALKTGRVDPND*