Scaffold Ga0118687_10017481

Overview

Basic Information

• Taxon OID: 3300009124
• Scaffold ID: Ga0118687_10017481
• Source Dataset Name: Marine sediment microbial communities from methane seeps within Hudson Canyon, US Atlantic Margin - Hudson Canyon PC-16 72 cmbsf
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2354
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → Virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment → Marine Sediment Microbial Communities From Methane Seeps Within Hudson Canyon, Us Atlantic Margin

Source Dataset Sampling Location

• Location Name: Hudson Canyon, US Atlantic Margin
• Coordinates
  • Lat. (^o): 39.54345
  • Long. (^o): -72.3998
  • Depth (m): 541.1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000613	Metagenome / Metatranscriptome	985	Y
F003678	Metagenome / Metatranscriptome	474	Y
F017146	Metagenome / Metatranscriptome	242	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0118687_100174811	F017146	N/A	AGLIGGSMFDGQPKQMRITRKMKSQARMVVNMTGGNLQAAADILGIDQNTLVFVLLKRFRNDGPVVTKAALRKTKQTVRRLKSMCDMYDDLRPRATTRRRTPVRRSTTTLIKN*
Ga0118687_100174812	F000613	AGGAG	MPLVKKKISVAAGATSDQVLAGTTYEYVDPGTRIVVAAAVNTAGAAGADTVMDFTVNNAEFSKNASVSTLVTGQPFGWSNTGYVMNDMVTTGQVRNRPVITFTNGTAATVEVDVAIFIGG
Ga0118687_100174814	F003678	N/A	MDIMNQILLYSSLFLALTSFILCLYACARVGNFIKATQGLEWDAIANITGDLATTKKTIQTLNNRINGMHSPKVAEQELMMQLLQNQHKPQPNGKLQGG*