Scaffold Ga0118687_10016635

Overview

Basic Information

• Taxon OID: 3300009124
• Scaffold ID: Ga0118687_10016635
• Source Dataset Name: Marine sediment microbial communities from methane seeps within Hudson Canyon, US Atlantic Margin - Hudson Canyon PC-16 72 cmbsf
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2407
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment → Marine Sediment Microbial Communities From Methane Seeps Within Hudson Canyon, Us Atlantic Margin

Source Dataset Sampling Location

• Location Name: Hudson Canyon, US Atlantic Margin
• Coordinates
  • Lat. (^o): 39.54345
  • Long. (^o): -72.3998
  • Depth (m): 541.1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F062681	Metagenome	130	N
F087047	Metagenome	110	N
F093732	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0118687_100166354	F087047	AGGA	MNKFKERYIFGFKSELHDETVLWRYTDEAEHQANNHKTYKPKVSDLVIMNKDLPKQLKLDIRHELLSDILQGDSKLPEKRL*
Ga0118687_100166355	F062681	AGGAG	MTEFRDAVEKQRGLQAYEQWAQQIKSYEGDCWKGTRTKIYNDGRKEVYDMKTNALIEGEPRKQRRRDLINSNSFVKFLNQIGFYNE*
Ga0118687_100166356	F093732	AGGAG	MSKQGETIHKQLEEILQDMPVQERLERTLARIEQYLAHADEVENLNHINFINEIKYQLEDITNKEKS*