Basic Information | |
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Taxon OID | 3300009124 Open in IMG/M |
Scaffold ID | Ga0118687_10011206 Open in IMG/M |
Source Dataset Name | Marine sediment microbial communities from methane seeps within Hudson Canyon, US Atlantic Margin - Hudson Canyon PC-16 72 cmbsf |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Oregon State University |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2962 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (75.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment → Marine Sediment Microbial Communities From Methane Seeps Within Hudson Canyon, Us Atlantic Margin |
Source Dataset Sampling Location | ||||||||
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Location Name | Hudson Canyon, US Atlantic Margin | |||||||
Coordinates | Lat. (o) | 39.54345 | Long. (o) | -72.3998 | Alt. (m) | Depth (m) | 541.1 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F010571 | Metagenome | 302 | Y |
F021404 | Metagenome | 219 | Y |
F022084 | Metagenome | 216 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0118687_100112061 | F010571 | AGGAG | MNTRQAIYIENLYEGFYEKHYEELSKTSDDVEWIEKEASRLAEIDLDNFEMEG* |
Ga0118687_100112066 | F022084 | GAGG | MTHQKYLKELFKLIEGKGYTIECECEGEEITKDEALTQVDETVIYVIDKDGHCLGWIYFLFWNDWDESISDYTLDLDKILNLDDFINRYTYMVN* |
Ga0118687_100112067 | F021404 | GAGG | MTYKINDKINYFFKGDEDNEPCEDVMIVKALKDLDNGEVFKLKPTSNNNNVLIKGDYDKSTNKYWATKWHDIKCSTLKDGNTLVFTGFIF* |
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