Basic Information | |
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Taxon OID | 3300009124 Open in IMG/M |
Scaffold ID | Ga0118687_10009673 Open in IMG/M |
Source Dataset Name | Marine sediment microbial communities from methane seeps within Hudson Canyon, US Atlantic Margin - Hudson Canyon PC-16 72 cmbsf |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Oregon State University |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3205 |
Total Scaffold Genes | 9 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (44.44%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment → Marine Sediment Microbial Communities From Methane Seeps Within Hudson Canyon, Us Atlantic Margin |
Source Dataset Sampling Location | ||||||||
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Location Name | Hudson Canyon, US Atlantic Margin | |||||||
Coordinates | Lat. (o) | 39.54345 | Long. (o) | -72.3998 | Alt. (m) | Depth (m) | 541.1 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F005819 | Metagenome / Metatranscriptome | 389 | Y |
F025038 | Metagenome / Metatranscriptome | 203 | N |
F048992 | Metagenome | 147 | N |
F054022 | Metagenome | 140 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0118687_100096732 | F005819 | N/A | MDYIDDMSLALPNQQQVGESNVDFKRFQYYLGLGASRSYEKVSNNFTITDRRVKQIAVKHQWQDRIKAINRMLNEQIINEVLAQVGETARDLADELKPLVFKIINEINERDLASMNPTELKGILDVCYKMVSQIYGLGSPQVQVTQVEYPQIKFKWDWEQDDDSDY* |
Ga0118687_100096735 | F054022 | N/A | MKIPHFKKNLKVKFVEAATDFIDPPTQEILWRYGKILFQVKSEHGAISYYIEENKKKVKISRYLIFPVN* |
Ga0118687_100096736 | F048992 | AGGGGG | MEYAADDINYGYMSILMHINSEYTLIDKIENIREIDGTIVHPIFGTNKGGVTFTLFLRGFYTVFEAVMNFGNRFDVYVVNEQGNTTMIDEDLDHLISLLHILYINKKAEEDELLNRALNPHTYRKVAKKMFYNEDPPF* |
Ga0118687_100096737 | F025038 | GGAG | VVNANNRRFFVEDEYNLYDVKKARPFWQDICTVNGWDIVKDDEDFKEDFVCQINNELYYMELQVVGYWHNFDLSYISNVRISASKVKLLREKKNGGLVFLNCVPNRFFAIHVDQVTEDMKKDSVREQFYEIPLRSINVNEVNVLDTDLCDCLENHLPIMKRSDGRMAFAQKDYNIRGANGICC* |
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