Scaffold Ga0118687_10004083

Overview

Basic Information

• Taxon OID: 3300009124
• Scaffold ID: Ga0118687_10004083
• Source Dataset Name: Marine sediment microbial communities from methane seeps within Hudson Canyon, US Atlantic Margin - Hudson Canyon PC-16 72 cmbsf
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5067
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment → Marine Sediment Microbial Communities From Methane Seeps Within Hudson Canyon, Us Atlantic Margin

Source Dataset Sampling Location

• Location Name: Hudson Canyon, US Atlantic Margin
• Coordinates
  • Lat. (^o): 39.54345
  • Long. (^o): -72.3998
  • Depth (m): 541.1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015083	Metagenome	257	N
F015341	Metagenome / Metatranscriptome	255	N
F019999	Metagenome	226	N
F054007	Metagenome	140	N
F073490	Metagenome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0118687_100040831	F019999	GGAGG	MAATSKLRTRGQYQLAEDGSTSVVDIYEVTATSESEAIATVVAATGLTQGDAHAEITGAKLRDYSATPDETLHNVWTFEARYNSRQQTRENAAYASQRTKGGMRSSSVEVPAFFDTYGYPLVNTAGDAYEGLGRKVRTRTVNVTHNATSIPNYIFNLGDTLNAAAVTILGTSYPAKTCKLTDVNCPDEPVSDKDGDLYYPVTYNIEINPIGWHILLPNKGPNQLIYQTRASSTADWSDDTKANYDSKLPTTDRRIVKRPIESEEQQNLGGEIW
Ga0118687_100040833	F054007	GAG	MEVETMVEKFSLLNDQEVDVSVRLSHRKPIREAVGVDIVAAAHDPDQLRQLLDLLTDPDKLWTVVSVVSGMPVDDLLAQADGSTEEEAGTALLESVVSFFPKSSPLRTPLMRLLERAKETHGEQVKNAEQLALEAVESLDIGSVISDANQQTNG*
Ga0118687_100040834	F015341	AGGAG	MANAADGSVLGDDCITYYSATLGGSGTLTEIPVIIDDTISSERRAVESNCRGDAEIAEHTGKPKHSVSGTLLVKRGTVGATYETLRDAYVNNTILAWAFATGDSADIGQHIFRMEGRLKRWEESRPDNDTVKVSFEIAKAADNTYASNWATVTS*
Ga0118687_100040835	F073490	GGTGG	MIQVDFDTTLGDFQRGFFDRVSDKVIAPKLRRFLSRAGGSIRKAAGRQFQSRAQKPLRELTPKQLRRFRQEQAEYKAGKRQEKPRRPDKVALPGQSPRVHTQKKSESLLAGRIFYALADDEQSVVIGPDKLNSKSSRMTLEKLEQRFPFMEPAFEAIEPRLPTYWPR*
Ga0118687_100040836	F015083	AGGAG	MASRSATLANALVTAISGWASLPSGVTVARVRSVTHLLVDMPTAAVGRVAVIVSSVEDQSSRGDVAEDVTIGIAVIGNCDSEAVAQSDSWDEFTESLRDWLRTDSQFRSMDLGSGLAAQRRSVSTVTVADADMLDENEIFVSATEAVWFMSVGNHA*