Scaffold Ga0118687

Basic Information
Taxon OID	3300009124 Open in IMG/M
Scaffold ID	Ga0118687_10000976 Open in IMG/M
Source Dataset Name	Marine sediment microbial communities from methane seeps within Hudson Canyon, US Atlantic Margin - Hudson Canyon PC-16 72 cmbsf
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Oregon State University
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Marine sediment microbial communities from methane seeps within Hudson Canyon, US Atlantic Margin - Hudson Canyon PC-16 72 cmbsf

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Oregon State University

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	11086
Total Scaffold Genes	18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (16.67%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

11086

Total Scaffold Genes

18 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (16.67%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (33.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment → Marine Sediment Microbial Communities From Methane Seeps Within Hudson Canyon, Us Atlantic Margin

Source Dataset Ecosystem

Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment → Marine Sediment Microbial Communities From Methane Seeps Within Hudson Canyon, Us Atlantic Margin

Source Dataset Sampling Location
Location Name	Hudson Canyon, US Atlantic Margin
Coordinates	Lat. (^o)	39.54345	Long. (^o)	-72.3998	Alt. (m)	Depth (m)	541.1
Location on Map

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Source Dataset Sampling Location

Location Name

Hudson Canyon, US Atlantic Margin

Coordinates

Lat. (^o)

39.54345

Long. (^o)

-72.3998

Alt. (m)

Depth (m)

541.1

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008687	Metagenome / Metatranscriptome	329	N
F015991	Metagenome / Metatranscriptome	250	N
F101072	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0118687_1000097613	F008687	N/A	MDKFLKTKRDNIFETCDPGKIFLVKSWTTAQICKTIGASAVYVGTDTLRSQNVTENFFEFIGFSRADIVTDDSSMIKNELPGWRWIQQNRTKIKSRIFIPCENTIDTINIQDKTLDPEGGKEIVETIHHRDIFKTTKEIMDEVLTTKGNFKVEDILGVHMDEPGNRLGIVQENYIHAKGITMSEISYIAEHLAEGDYWDTMMYSPNYTEQIHEQFVISAVINPCAIIKNRIPHEKMSPARVWTKDFNMRLKKSLEKHWLVSDPDTMQVLRLKPELIPEYCTNSSGIHYINQTSMGSKVKNDVLKELKLKLKEREQDFL*
Ga0118687_1000097615	F101072	N/A	MKLNMKMPKLSQQAMIVAVAAVLPVLASAYKLRIMDAAVLALSGALAVYNVNCLTAGSCNTWATVVSISFFIMTIMQLMAPREGMEGEKETTVEVADEEVVVEAPTETKEVKAPAAPEPTVAKMPAETKPNGMSKIAAAPIATTETKAVVATTNSVPANDSDYELELLKQEFDGM*
Ga0118687_100009765	F015991	AGG	MAFLPFLRHGDLYDLLDTTSKVLNEIPNIEKHFHGKLADRFIYKTTKSLDDGFEIEMHLAGVGKDNIHITLSSDDHEVTVAYGENRSSSFDLPSYVDVSDEGYKATYIDGVLRLFFKMRTSDKKRREIKLN*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0118687_10000976

Overview

Ecosystem & Geography

Associated Families

Sequences