Scaffold Ga0118687_10000940

Overview

Basic Information

• Taxon OID: 3300009124
• Scaffold ID: Ga0118687_10000940
• Source Dataset Name: Marine sediment microbial communities from methane seeps within Hudson Canyon, US Atlantic Margin - Hudson Canyon PC-16 72 cmbsf
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11279
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (43.75%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment → Marine Sediment Microbial Communities From Methane Seeps Within Hudson Canyon, Us Atlantic Margin

Source Dataset Sampling Location

• Location Name: Hudson Canyon, US Atlantic Margin
• Coordinates
  • Lat. (^o): 39.54345
  • Long. (^o): -72.3998
  • Depth (m): 541.1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007167	Metagenome / Metatranscriptome	356	N
F008746	Metagenome / Metatranscriptome	328	N
F021101	Metagenome / Metatranscriptome	220	N
F042805	Metagenome / Metatranscriptome	157	N
F046347	Metagenome / Metatranscriptome	151	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0118687_1000094011	F008746	N/A	MRFNKNGFLKSLNENVKQAIIALKNAPELKKAVIVDVLQRFNKIIKTAKFPDDVSMVRNGFFLYGGQVIQEVFQQTKKLVDPKIRAAMEMTPSSDYDGQLILKFKKDGKLSRAENISKETKLKKFLLKVMEKAAEPYGPLFKVSVTTKLPHVIDISLADAKTGFDYAEIHVVNGYMKERIGNEYTERGPDRLAQTKCCVETLKSLGLPVLNLKSLLYDQLFALDSMLTGNSHRKAVRPDKCQQRFVRMTFIYDLMKKTKKSIPKNVSLLVNEIVMRMDQPKYKNYFKQCSVKIH*
Ga0118687_1000094014	F021101	AGAAG	MWFVPLFIGIHSFFEKKLSPKKTHTLVNMFHMASVFMWNPGFIVSRSYFLADFFLLYKNRRAYPGLWQLLLAHHVVSYAILVTEQESEDVDLALKWAEVSNLSLAVYELYPNTFTKTMRVIIYPWSRCAMLPMVLVESTKTLGVKALALGVPIVGGSFWWSWKIIKDFLRK*
Ga0118687_100009404	F046347	GAG	MGELVEIYEEMGDHTRANTFSEAVQQIVNHAEQFDISIKTTKDVDKFKGLEGVGRSTLELFKEFVTTGEMKRLIDLRGED*
Ga0118687_100009405	F042805	AGG	MKVTFPGWLGWFEEETLEDKDKVSIIENCFMEIKDVYAEKLLWPSICMDEEDSCDSEDDLEMIWHYSEAQTYLEKYLEENGYNRDYYHIMHVEATFHEPGKEPRKLKFYVKEITCEIRHPGGNCPDEMFKWWVCEDKYGDFDEYIHDIPGENYRIFLYCLNKAWQDVKALPECITKLIDKKRSTIKDDSLRVADEDGRTG*
Ga0118687_100009406	F007167	N/A	MEVKDAIFGFYLSPSSAVYIPKEGVESKKMKDGTIIKVPKYMYHPLTIEIMPRADYKTIQHPKRKKFLFSMRETKPVPADIRKYIENPEPEKLREALVVIQRRIRQMFDTPIQTMTLVAFRFDGVPWKVHRMHWDEKQEVSYRKDGEWVTTTMKRLGNPWDLKSKVERDRKKAELFNVISNLLEDKDKIPYVSRMLIDRFR*