Scaffold Ga0118687_10000753

Overview

Basic Information

• Taxon OID: 3300009124
• Scaffold ID: Ga0118687_10000753
• Source Dataset Name: Marine sediment microbial communities from methane seeps within Hudson Canyon, US Atlantic Margin - Hudson Canyon PC-16 72 cmbsf
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12558
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (34.38%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment → Marine Sediment Microbial Communities From Methane Seeps Within Hudson Canyon, Us Atlantic Margin

Source Dataset Sampling Location

• Location Name: Hudson Canyon, US Atlantic Margin
• Coordinates
  • Lat. (^o): 39.54345
  • Long. (^o): -72.3998
  • Depth (m): 541.1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031840	Metagenome / Metatranscriptome	181	N
F086721	Metagenome / Metatranscriptome	110	N
F098878	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0118687_1000075322	F031840	AGGA	MDTLKQFKTFDDLVFSPHPHFKDLGIQANLTLDNGYSFSVVANVEGGTFVYGNHPDTYEVAVFNQRGNPVPLSVSGDHLSYQQPHEISALMRQFEMDGILHEHLLVAIRQNYNERQPL*
Ga0118687_1000075327	F086721	N/A	MKIIDIIFFTANDNKVSAHLYFSTQDSVCESVSSVGVSRKQAVFNLCKEGKLSWDLFAKVKGLALTKKDPRFEKKTFVSRNSIRDQKLADICDDMRCSVTEAVAFLDRGVMPCGW*
Ga0118687_100007534	F098878	N/A	MNETKVTESEITKSIEDYLDGCSKQELLDLHNFIFSEYISDLDDVEWGE*