Scaffold Ga0118687

Basic Information
Taxon OID	3300009124 Open in IMG/M
Scaffold ID	Ga0118687_10000657 Open in IMG/M
Source Dataset Name	Marine sediment microbial communities from methane seeps within Hudson Canyon, US Atlantic Margin - Hudson Canyon PC-16 72 cmbsf
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Oregon State University
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Marine sediment microbial communities from methane seeps within Hudson Canyon, US Atlantic Margin - Hudson Canyon PC-16 72 cmbsf

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Oregon State University

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	13670
Total Scaffold Genes	17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (17.65%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

13670

Total Scaffold Genes

17 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (17.65%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (33.33%)

Associated Families

Taxonomy
All Organisms → Viruses	(Source: IMG/M)

Taxonomy

All Organisms → Viruses

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment → Marine Sediment Microbial Communities From Methane Seeps Within Hudson Canyon, Us Atlantic Margin

Source Dataset Ecosystem

Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment → Marine Sediment Microbial Communities From Methane Seeps Within Hudson Canyon, Us Atlantic Margin

Source Dataset Sampling Location
Location Name	Hudson Canyon, US Atlantic Margin
Coordinates	Lat. (^o)	39.54345	Long. (^o)	-72.3998	Alt. (m)	Depth (m)	541.1
Location on Map

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Source Dataset Sampling Location

Location Name

Hudson Canyon, US Atlantic Margin

Coordinates

Lat. (^o)

39.54345

Long. (^o)

-72.3998

Alt. (m)

Depth (m)

541.1

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010083	Metagenome / Metatranscriptome	308	N
F010538	Metagenome / Metatranscriptome	302	Y
F031470	Metagenome / Metatranscriptome	182	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0118687_1000065711	F010538	N/A	MRTQTIFLIALAVAVAGFFLMKNREGLRWDRGFAGFRPEVSGVITEGNLDITGNPVEDVSIKAMMIKKILDSTVQEIFKTRGLKMFPIETVFIQVFDSPDKIGELKKNRPDVYDAYVKFLQERDRESVATRNGDGTEQEELARTSLMNYLEALKRDQDYATVPDNVPATYRCRFLLLETERFYGSEVDVIAMGDANGIKIQGITSQPLKDGDPIKAFRDTLKAGDWMPYDTIANANVPNKSALSLVDKAIKEKWGDSEDTRYSKTVAAATEWLANNPDEDTTNVN*
Ga0118687_100006575	F031470	AGGA	MRLNDGISLNKINPYADPMNFTPGVPLGGAYKTVYAPSKDPQVALVNSVRPTGDALGGTIAPQDFEPSQGCEKTIAAGWRTPYYCTPGSQDYPLNRNPYPERNYSLPPWLNVPLVEKDNILVKTEGMMGIANAASVAGGTAALIILAISMVTLFKVL*
Ga0118687_100006577	F010083	N/A	MYKFIVKLVGWWNDENPYRTTMPLKMIYDINTAKDCMLPSAEWKRIMEGWPLMRSGETYTTCYYPDFRDAIYVLRRKKPLCVENIRYEQEYTYRGSPYSLITRDPMRRIGDISEDHDDEPKMKGPVMIQKVEAVMENGEVTMWDTPRFLRYAGPRSDFHGSKDILMRDLFDANEEVPDEWRVYMFGKTVVIKKDEMLTPRTLVPGRI*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0118687_10000657

Overview

Ecosystem & Geography

Associated Families

Sequences