Scaffold Ga0118687_10000626

Overview

Basic Information

• Taxon OID: 3300009124
• Scaffold ID: Ga0118687_10000626
• Source Dataset Name: Marine sediment microbial communities from methane seeps within Hudson Canyon, US Atlantic Margin - Hudson Canyon PC-16 72 cmbsf
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14131
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (16.67%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment → Marine Sediment Microbial Communities From Methane Seeps Within Hudson Canyon, Us Atlantic Margin

Source Dataset Sampling Location

• Location Name: Hudson Canyon, US Atlantic Margin
• Coordinates
  • Lat. (^o): 39.54345
  • Long. (^o): -72.3998
  • Depth (m): 541.1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015725	Metagenome / Metatranscriptome	252	Y
F020698	Metagenome / Metatranscriptome	222	N
F025730	Metagenome / Metatranscriptome	200	N
F026547	Metagenome / Metatranscriptome	197	Y
F043373	Metagenome / Metatranscriptome	156	N
F049007	Metagenome / Metatranscriptome	147	N
F073488	Metagenome / Metatranscriptome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0118687_100006261	F026547	N/A	MFVPFIASLIINLFVLELVPFIYVKSFGCPDYLASEDRENMMRGTKWIIRLLALGISLLIGFLIFGSGNMTKFYIHAFLAWTAFLFLTFFGIPVEKFLFFKTVSLKERCKNFKPKFKLSNK*
Ga0118687_1000062610	F073488	N/A	MDFEEFHVRDVQKLLREIILPRLCDLEQEMQLLRKTTWPICQAMREHYSFKIDENANISRQLKALVDPEEYRRIVHIKEEFRHRYCDKIRNSL*
Ga0118687_1000062612	F043373	AGG	MSFDHIADNYSRALLLDAYQAMFKSNSWDALKAHGDKSGFQYTDEAKSLLDHMNLLEKHSGGSMVWVMSHIKKIAKFGYVGYVKEFMNSTNSNER*
Ga0118687_100006262	F015725	N/A	MSDNRPWEYRNISVDYFTTMLKKAFAQYQAQLYFNAFSCLLISMVMVIAFHDLFSMFLLRPTKSTCRLMAWGGIEKIVFIRWMLLLPAIFFTVLFAGFFATLTTQTCDDGDQFCNIEFLNYKLIFVGIVLGLFVMAMFYAWKRRKPGSVEYLMIASLMDAKQDGRSRFLKKCKKSKDFKAIMAKQNT*
Ga0118687_100006264	F049007	N/A	MPACFPDMQPLVIDHNPFVFVKPVTGPAQFAASHVTPDTKFMCNTYTNRPTQMIARAPGGTAVRSSDPVTKVYQYSIQRP*
Ga0118687_100006267	F020698	N/A	MMAVILVGLVAFFFWRRTQEGLRPEFTPRCKQLLSIPVARIFPDAMIPERKEDALAKFGMLKDKLDEQALKGNKLATECRLIVDNLMKQLRDDNMEGFSDALKKLLM*
Ga0118687_100006269	F025730	N/A	MIVLLAAVLFYVVSNPATYKLVESLLGRFFKIATNGSPTATGLLVHTAVFAALFYLLAPMVSGLDAKEYRSIIDAKLSDTKNRNENFDDVLMTPLRVATAEEETEAVKKEE*