NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0118687_10000563

Scaffold Ga0118687_10000563


Overview

Basic Information
Taxon OID3300009124 Open in IMG/M
Scaffold IDGa0118687_10000563 Open in IMG/M
Source Dataset NameMarine sediment microbial communities from methane seeps within Hudson Canyon, US Atlantic Margin - Hudson Canyon PC-16 72 cmbsf
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterOregon State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14988
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (72.41%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment → Marine Sediment Microbial Communities From Methane Seeps Within Hudson Canyon, Us Atlantic Margin

Source Dataset Sampling Location
Location NameHudson Canyon, US Atlantic Margin
CoordinatesLat. (o)39.54345Long. (o)-72.3998Alt. (m)Depth (m)541.1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F062720Metagenome130N
F074875Metagenome119N

Sequences

Protein IDFamilyRBSSequence
Ga0118687_1000056325F074875GGAGMITKCNCPEEKNCAGHLTLQEQKLLYTSEQYMNRNLDDDIVTVPTNRCFMCREEGTVEVIRKDWHEYMWDNPRKTVQEYFPYLDASMREQIISGSHPKCFDTLLEEE*
Ga0118687_100005638F062720AGTAGMSANFDSNVSLTLEVGFDSEPFDETQSFTDITSYLRAFTTRRGRANELGDFVAGTMSFSVSNADNRFNPNNTSSPYYDSGNARTKIQPLKRVRMSATYDATTYRIFEGFLQSVPVKFISEGADSIVTFTCVDAFKIFQSSQLDGVGWRLGTVGFTELGLSTRLSYVDEQELSSDRITRILDAIGFPSNRRDILTGSKEVISQSITTNVLTGLRECEIAENGQFFIAKDGKATFRNRDYKLSNANAITVQGNFSNDGSNLPYTNVSTSFDDNEIINVYEWQRSGGSIQYKADADSVLRYRAKESNKTTINVSDADVLSIIEQKIAETSLPIVRIDDLTVNPRENTSLWEQVLGREFGDRISVKIVNVDGSSFTDELWIESISHNVNASSQSWSWTATLSPAGSSAWILGQAKLGEGTRFVYA*
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