Scaffold Ga0118687_10000536

Overview

Basic Information

• Taxon OID: 3300009124
• Scaffold ID: Ga0118687_10000536
• Source Dataset Name: Marine sediment microbial communities from methane seeps within Hudson Canyon, US Atlantic Margin - Hudson Canyon PC-16 72 cmbsf
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15383
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (80.00%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment → Marine Sediment Microbial Communities From Methane Seeps Within Hudson Canyon, Us Atlantic Margin

Source Dataset Sampling Location

• Location Name: Hudson Canyon, US Atlantic Margin
• Coordinates
  • Lat. (^o): 39.54345
  • Long. (^o): -72.3998
  • Depth (m): 541.1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010613	Metagenome	301	Y
F010614	Metagenome	301	Y
F013407	Metagenome	271	N
F017125	Metagenome	242	N
F034560	Metagenome	174	N
F058112	Metagenome	135	N
F105093	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0118687_1000053612	F058112	GGAG	MTPEQRQQLTIAQAAAQARNREAFRTNPNLQIWLRQVRTAAVIRRTAHNFARWKNE*
Ga0118687_1000053613	F010614	AGGTGG	MNDDETYKQWAKLCRMYITRGNAEIDQMVSELHTMAGIREGFEDADAWEAMHDRAVQDAESQRPNSPEYAWALLRVLGVKLWMVRALEAMEEGADA*
Ga0118687_1000053620	F013407	AGG	MSGPITRHHWHALAADIYARGGYRNYGIDPMSILAMLNTIVPQVLQWVADCKRLRDDEVQPAVAAMHARNPAQAKRRTAAQCKKLRRKQGEQFCKEFNVPRGNRRVILQADFTLTDEQSTAMAEDMIAECCNRSAEDVARFAAAARGA*
Ga0118687_1000053624	F034560	N/A	MADQNETPQDDDNDGVEWRTLNRTVRVDARTSQKLIDWIGPHLRLIVAAVAWGVFIVATCYAASLVL*
Ga0118687_100005363	F105093	GGA	MILQRLNAAGPMPLNSAAASIMPLVPFAYVARQGKGSALIAAKIKLRSLQAGGWVQIAAGVVTVQRTERQSSRLRRCVDELNRTGRCDTSAIWSNKRSAQTVISRMKLLGWVAPDDVWPVVSFVGRQPASADEFNAHKQAARVSK*
Ga0118687_100005364	F017125	AGG	MKRQYATGPGLRPNVFGIWRDEPGHSMYEDDEPEPATHWTTERSERDRQISEFVRWRIARGERIAAESEQRRQRIQAARSAAAVMGADVFRAFIKGCNNG*
Ga0118687_100005368	F010613	GAGG	MTPNPEHVQLLILDHERAREHLREQLRTQTPWMIAELITRGWTAQRIARKCGRTREHVKAIHRQERRAGAAVAFSIAQVLIEAREEAKCT*