Scaffold Ga0118687_10000351

Overview

Basic Information

• Taxon OID: 3300009124
• Scaffold ID: Ga0118687_10000351
• Source Dataset Name: Marine sediment microbial communities from methane seeps within Hudson Canyon, US Atlantic Margin - Hudson Canyon PC-16 72 cmbsf
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19244
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (36.67%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment → Marine Sediment Microbial Communities From Methane Seeps Within Hudson Canyon, Us Atlantic Margin

Source Dataset Sampling Location

• Location Name: Hudson Canyon, US Atlantic Margin
• Coordinates
  • Lat. (^o): 39.54345
  • Long. (^o): -72.3998
  • Depth (m): 541.1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009208	Metagenome / Metatranscriptome	321	Y
F017634	Metagenome / Metatranscriptome	239	Y
F022881	Metagenome / Metatranscriptome	212	N
F030744	Metagenome / Metatranscriptome	184	N
F063659	Metagenome / Metatranscriptome	129	N
F077038	Metagenome / Metatranscriptome	117	N
F078659	Metagenome / Metatranscriptome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0118687_1000035112	F017634	N/A	MDSFNAIASIAFGMIAAWVVFEKSETYIPLQTDPGDDPSKYYASPMEVMNETLYVTNPESLYAGFSLEPGQQVQKIPIGPVVDRLGNVQEIPGLPARDILYPIREDANLEIEQIPVPGSGSGDIEVFPQL*
Ga0118687_1000035115	F030744	N/A	MAAPTGVVPALNPAEAVYFISLYFFNYFVLQLVSKIMTLLNKTEPEEGSDEERTATFQEFFTLLFYLLSVISLLFITLQAKGSSRPATFSGLVIALIAVPSSLGQFDLFNDAYAKYMVPLGVTLITNYYIG*
Ga0118687_1000035118	F009208	N/A	MANKKNGDGLVTAITLLFAFAVVLAAYLSGPENNFWMAPGAIMYMVLLLAIAIPRWPAVGDDTKLNKNLAVIIAIMLVPSVMSPILGIKTSSNVYSYWQSIMIPIYAGYALQKRGMPGSGVLVTFSTPLVLMLSMIFSINPLPNAVKIPGTNVANK*
Ga0118687_1000035123	F022881	N/A	MSEGMPISDQFKEAIAELEGIKKQLTEAQKAIKVLKDREASLKTFIGGYMTAQKIDDVQTRGGTKVTQKTSIKKPVVTKKILMDELPNYIEGGQERLEQIIKEIEEKLEPKETSTLQLKLKK*
Ga0118687_1000035124	F063659	N/A	MVSSSLLDYTPIAQPQVVEDPQLEEDDEGFFDPNEYEYEDWIAYYSDELWNNWENYRQQCYDHMIPEDISFSEFCKNEYYY*
Ga0118687_1000035125	F077038	N/A	MPRLPDVTSTKVIVPTVLFAFLSPAVTGMGDLTDRLGMTSVFGILYIIILRGVMKFVVRPSEVYLASAMYFILSGMTTNQNLIIRNTFLYWIVFAIIRSQSPLEF*
Ga0118687_100003513	F078659	N/A	MWYEPETEYDIRLVNMDQLMMTPAIIRAVKRAGVRLKEKDFEMDPYPAPTPLREDIAKLDFFEGTPVRVKEQGDFYSIVDGRHRVAAMLCKKFKKISVEVVSV*