NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0117941_1000248

Scaffold Ga0117941_1000248


Overview

Basic Information
Taxon OID3300009120 Open in IMG/M
Scaffold IDGa0117941_1000248 Open in IMG/M
Source Dataset NameLake sediment microbial communities from Tanners Lake, St. Paul, MN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Minnesota - Twin Cities
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18904
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (71.43%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Lake Sediment → Freshwater Sediment Microbial Communities

Source Dataset Sampling Location
Location NameTanners Lake, St. Paul, MN
CoordinatesLat. (o)44.953471Long. (o)-92.97875Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003908Metagenome / Metatranscriptome462Y

Sequences

Protein IDFamilyRBSSequence
Ga0117941_10002486F003908AGGAGMPGFNMITHRLAYAAVALCVPAFGGCSSPAKKQPLSLQEMIAADPLPLAKGAKWTYEVTVKRFDPEADKETTKTLTWVTEVIDAKQGNGVVAYRVRGWPTDLATMELTDTAPAATERTILRNGNNFLFGASAEPTLDGAEGWFSWPVIDGQKICPSAEMVYCWQVTSVENGYKLSFYTGPDEQAYELEPNTGVSRFHYAHHGTTNEVEAKLVAYDKPGR*

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