Scaffold Ga0117938_101033

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0117938_101033

Scaffold Ga0117938_101033

Overview

Basic Information
Taxon OID	3300009119 Open in IMG/M
Scaffold ID	Ga0117938_101033 Open in IMG/M
Source Dataset Name	Lake sediment microbial communities from Leach Lake, MN
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Minnesota - Twin Cities
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1526
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Lake Sediment → Freshwater Sediment Microbial Communities

Source Dataset Sampling Location
Location Name	Leech Lake, MN
Coordinates	Lat. (^o)	47.18868	Long. (^o)	-94.626271	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021795	Metagenome / Metatranscriptome	217	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0117938_1010332	F021795	N/A	MKKEADRIRRWRERQKAEGKSSFTVLLSQEAREFLAEEKEKTGDSYAVIVEKALHTLKKQGYRPPVLRAFPKREESVARAAAREHHHPPVSAVTSHENGAQSRILIDDLANYPSLEDIEREQTGKEQNGIYDLKSNEGLITRLLRSSAGPFGRKKKWFK*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.