Scaffold Ga0115923_10457167

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0115923_10457167

Scaffold Ga0115923_10457167

Overview

Basic Information
Taxon OID	3300009112 Open in IMG/M
Scaffold ID	Ga0115923_10457167 Open in IMG/M
Source Dataset Name	Microbial communities from sand-filter backwash in Singapore swimming pools - KB-2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Singapore Centre on Environmental Life Sciences Engineering (SCELSE)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	600
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Built Environment → Unclassified → Unclassified → Unclassified → Swimming Pool Sandfilter Backwash → Microbial Communities In Swimming Pool Backwashes

Source Dataset Sampling Location
Location Name	Singapore
Coordinates	Lat. (^o)	1.28967	Long. (^o)	103.85007	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F082452	Metagenome / Metatranscriptome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115923_104571671	F082452	GAG	LVCFSFLAARERSEATMRFNIFGNTIFGITITGQGINGVVEGTHVVALRHLVSKLSHRLSLRLAALRLASWRAFMCTPAAMTPAMATCPRYTDRRQDRPRVVVTRDAVSGS*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.