Scaffold Ga0115923_10394230

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0115923_10394230

Scaffold Ga0115923_10394230

Overview

Basic Information
Taxon OID	3300009112 Open in IMG/M
Scaffold ID	Ga0115923_10394230 Open in IMG/M
Source Dataset Name	Microbial communities from sand-filter backwash in Singapore swimming pools - KB-2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Singapore Centre on Environmental Life Sciences Engineering (SCELSE)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1237
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Built Environment → Unclassified → Unclassified → Unclassified → Swimming Pool Sandfilter Backwash → Microbial Communities In Swimming Pool Backwashes

Source Dataset Sampling Location
Location Name	Singapore
Coordinates	Lat. (^o)	1.28967	Long. (^o)	103.85007	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F105218	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115923_103942302	F105218	N/A	SILFYNIYSSGATSGNTENTRINITNTSVTSAAFVHLYFVANGCSIADSFICLTATQTASFLASDVDPGVKGYIIAIAVDGVFGCPVAFNHLIGDEYIKLSTGHAANLGAVAFAALYNGVVPGCDANSVTAVVRFNGVVGDGYNRAPAVLALDNLPSRVDGNDTMIVINRVGGNLGIGASSLGALFGLLYDDAENVISFSVTGGCQLMASLNNNFPRTTPRVETFIPAGRSGWMKIYNQQGTIGILGAAINFNANAGASAGAFNGGHNLHHLTLNALDGYVVPVFPPSC*

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