Scaffold Ga0117925_1112034

Overview

Basic Information

• Taxon OID: 3300009110
• Scaffold ID: Ga0117925_1112034
• Source Dataset Name: Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, May cruise - 198m, 2.7-0.2um, replicate b
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1007
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 198

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051547	Metagenome	144	N
F060433	Metagenome	133	Y
F071758	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0117925_11120341	F071758	N/A	NYNMVEHTCKKCKIPKYGYTDGIHSIYLCYKCGRYEGISGGDEDFVKEINEEPMLLLHMIKSKMLVPIS*
Ga0117925_11120342	F060433	N/A	MEISSIIEALLIASILGMGGALYGFFKKMSSTQADLCETVARLQKTLIILAKAVDRQSNRLHPEDANSELDDLVKELLDK*
Ga0117925_11120343	F051547	GGA	MIDPLLIATISVIGGAILNTVRGFLGSSESTYDIKKFFGALIVAVFAGIAVAQTLSLAGLGLVETVLIGLSVGFSVDYAVSKAKKTA*