Scaffold Ga0117925_1039394

Overview

Basic Information

• Taxon OID: 3300009110
• Scaffold ID: Ga0117925_1039394
• Source Dataset Name: Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, May cruise - 198m, 2.7-0.2um, replicate b
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2063
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 198

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027156	Metagenome	195	Y
F029745	Metagenome	187	Y
F048570	Metagenome	148	Y
F058991	Metagenome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0117925_10393942	F048570	GGAGG	MKVGDLVRCRPRNERENYDEWLGLIIAEPPLAKTVQWICSDGRGHVEEVNHSPEELVLVNENR*
Ga0117925_10393947	F027156	GGAG	MIPKVGQLLRWYDNFTLDCDGPNHDVGIVKAVEFEGVNFFDNDEYAYVVIIDWCKGPHHSIHDQQEWEESIQTNEIVVVE*
Ga0117925_10393948	F058991	GGAGG	VQTHADFRIGMLVRWHGDTQDGADIDELGVVIQMPGANWSGNYHIAWSISNTVSHHSPDMIEESLYQGHLEIV*
Ga0117925_10393949	F029745	GAG	MASKAPRVGDVVKSRVTTESVAGFIVGTEGIHVWVRFFETADAGEDWDVYTRRDTLEVISRANSR*