NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0117920_1086014

Scaffold Ga0117920_1086014


Overview

Basic Information
Taxon OID3300009108 Open in IMG/M
Scaffold IDGa0117920_1086014 Open in IMG/M
Source Dataset NameMarine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, May cruise - 234m, 2.7-0.2um, replicate a
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Genomics Facility
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1322
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location
Location NameCariaco Basin, Venezuela
CoordinatesLat. (o)10.5Long. (o)-64.66Alt. (m)Depth (m)234
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000659Metagenome / Metatranscriptome952Y
F012921Metagenome / Metatranscriptome276Y

Sequences

Protein IDFamilyRBSSequence
Ga0117920_10860141F012921N/AMADDFDFGFSAVSTDEFKKTQTDTDTTPPSSVSSDEFDELSKKIDAISSLIHSLGDKEDTSLFDETGEKISRLEGKVDKILEIESTQIASALSEQGSSIRAVIDEVEERKGELND
Ga0117920_10860143F000659N/ALEEANSKYIVSKNPHDKKWYVMGHVGRNKWMPVSNGFKNKAQAQKWAKSQDKVDSAARGEISGV*

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