Scaffold Ga0117920_1012881

Overview

Basic Information

• Taxon OID: 3300009108
• Scaffold ID: Ga0117920_1012881
• Source Dataset Name: Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, May cruise - 234m, 2.7-0.2um, replicate a
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4957
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (22.22%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 234

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023712	Metagenome	209	Y
F091857	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0117920_10128817	F023712	N/A	VSSLKRKKNKKNILIFFKKMLAILGECVILFAVMRDKMIYELTWKNEDTNRVSSKKFAGEAGKDHSAMDAALELAQEADGNLWPWVLERDGQEVASGWGGDQLNRGRLFPTCG*
Ga0117920_10128819	F091857	N/A	MKKIICLVGAICLSGCVVTEKEVVYKRISFADKDGVTTVYYPPTWQKFLKPMDDGTPKTMLVRFGTTLNTQTE*