Scaffold Ga0117902_1220741

Overview

Basic Information

• Taxon OID: 3300009104
• Scaffold ID: Ga0117902_1220741
• Source Dataset Name: Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 143m, 2.7-0.2um
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1848
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 143

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010829	Metagenome / Metatranscriptome	298	Y
F061900	Metagenome / Metatranscriptome	131	N
F084706	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0117902_12207411	F010829	GAG	MGNLADHHRLREEQGLYKEDPGSGTYTKDEMDYIPFLSKNPSDERPAVYTARFKLSDGVIELEAKRSGGKLYLTCLADEKHNRAIFECVERFVTAIFDGSARQIKDAEPDDSEIMKLK
Ga0117902_12207414	F084706	GGAGG	MKAPEVGTTLGKCIFDNGIIVEGQSIRSQYATLRSGRWICGECLLDMLPIALEATQSHMIEEAEKRDKLLAEVKKYGWAVNPDTGKLEKL*
Ga0117902_12207415	F061900	GGAGG	MTDSSSEDMHMAQELMEAKMALGQARNQMTHMLRMGNFHIEIVPNKDIDIEKFFTKTMDNLWDRFGKDALEVKVSGMEGMKPPNGGGGMHG*