Scaffold Ga0117902_1054692

Overview

Basic Information

• Taxon OID: 3300009104
• Scaffold ID: Ga0117902_1054692
• Source Dataset Name: Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 143m, 2.7-0.2um
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 4766
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (58.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 143

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003898	Metagenome / Metatranscriptome	463	Y
F009988	Metagenome / Metatranscriptome	310	Y
F077328	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0117902_105469212	F077328	N/A	QHGKMGAPRWNNDASKVIVKYELPIQDGTLDAVSGTSGITAMSHSEAIEEMKKDEWNGE*
Ga0117902_10546927	F009988	AGGA	MEWMNWENFAYLMVIILGAVGTMVATKYRIVVKELKEVATKYHEASKDGKITKVEQQAIAKECMDVMMAVVKMVWKF*
Ga0117902_10546928	F003898	N/A	MDSLKVTGISTGLGLAYWTDIISGVLMCVMFAVQIYYLYLKTKKIKES*