NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0117901_1298025

Scaffold Ga0117901_1298025


Overview

Basic Information
Taxon OID3300009103 Open in IMG/M
Scaffold IDGa0117901_1298025 Open in IMG/M
Source Dataset NameMarine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 143m, 250-2.7um
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Genomics Facility
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)757
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location
Location NameCariaco Basin, Venezuela
CoordinatesLat. (o)10.5Long. (o)-64.66Alt. (m)Depth (m)143
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019388Metagenome / Metatranscriptome230N
F029556Metagenome / Metatranscriptome188Y

Sequences

Protein IDFamilyRBSSequence
Ga0117901_12980251F029556GGAGMSMMKFDDSKIKEIRKRKEQGLPPLPTGGDVVEQSKNAKGGSELIYQRVKERVPEDLWNYFQIILSRVRHYEDKPKILWFQDTSKDPEVQFLKDKSHRDKFERFVFPSDWSLEKYNIDLGVEYEKSVV
Ga0117901_12980253F019388N/AKEQNPYIVAYKNGQTVKFSKIDADNLAVVKQLDGNDVEVFHDGKLQYKLHGMEQGKLF*

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.