Scaffold Ga0117901_1171292

Overview

Basic Information

• Taxon OID: 3300009103
• Scaffold ID: Ga0117901_1171292
• Source Dataset Name: Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 143m, 250-2.7um
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1191
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 143

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007550	Metagenome / Metatranscriptome	349	Y
F013467	Metagenome	271	Y
F066699	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0117901_11712922	F007550	N/A	MKKVIITFLLLTCVALVNAASLELKVMKQKTLPNGNAYGLPSGIYFKLKDLHPFIMYKLQYSEDLKKWVDMVHLGTHDISMTSPFYTWDELPPHGCFFRIVETW*
Ga0117901_11712924	F013467	GGGGG	MTAFGSLKNWVWCEDCLEWKDAGEEVGFVNIAEDTFGKDVMTFECDKCGNTNVGIIISSATRPRGQ*
Ga0117901_11712925	F066699	GAGG	MKIKIPIYWDMAAQEENEVIVNVPNAAVKEVFMNFLLRKNYTKRREWLIKNVPEINLNIPKELL*